""" Nested Transformer (NesT) in PyTorch A PyTorch implement of Aggregating Nested Transformers as described in: 'Aggregating Nested Transformers' - https://arxiv.org/abs/2105.12723 The official Jax code is released and available at https://github.com/google-research/nested-transformer. The weights have been converted with convert/convert_nest_flax.py Acknowledgments: * The paper authors for sharing their research, code, and model weights * Ross Wightman's existing code off which I based this Copyright 2021 Alexander Soare """ import collections.abc import logging import math from functools import partial import torch import torch.nn.functional as F from torch import nn from timm.data import IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD from .helpers import build_model_with_cfg, named_apply from .layers import PatchEmbed, Mlp, DropPath, create_classifier, trunc_normal_ from .layers import create_conv2d, create_pool2d, to_ntuple from .registry import register_model _logger = logging.getLogger(__name__) def _cfg(url='', **kwargs): return { 'url': url, 'num_classes': 1000, 'input_size': (3, 224, 224), 'pool_size': [14, 14], 'crop_pct': .875, 'interpolation': 'bicubic', 'fixed_input_size': True, 'mean': IMAGENET_DEFAULT_MEAN, 'std': IMAGENET_DEFAULT_STD, 'first_conv': 'patch_embed.proj', 'classifier': 'head', **kwargs } default_cfgs = { # (weights from official Google JAX impl) 'nest_base': _cfg(), 'nest_small': _cfg(), 'nest_tiny': _cfg(), 'jx_nest_base': _cfg( url='https://github.com/rwightman/pytorch-image-models/releases/download/v0.1-vt3p-weights/jx_nest_base-8bc41011.pth'), 'jx_nest_small': _cfg( url='https://github.com/rwightman/pytorch-image-models/releases/download/v0.1-vt3p-weights/jx_nest_small-422eaded.pth'), 'jx_nest_tiny': _cfg( url='https://github.com/rwightman/pytorch-image-models/releases/download/v0.1-vt3p-weights/jx_nest_tiny-e3428fb9.pth'), } class Attention(nn.Module): """ This is much like `.vision_transformer.Attention` but uses *localised* self attention by accepting an input with an extra "image block" dim """ def __init__(self, dim, num_heads=8, qkv_bias=False, attn_drop=0., proj_drop=0.): super().__init__() self.num_heads = num_heads head_dim = dim // num_heads self.scale = head_dim ** -0.5 self.qkv = nn.Linear(dim, 3*dim, bias=qkv_bias) self.attn_drop = nn.Dropout(attn_drop) self.proj = nn.Linear(dim, dim) self.proj_drop = nn.Dropout(proj_drop) def forward(self, x): """ x is shape: B (batch_size), T (image blocks), N (seq length per image block), C (embed dim) """ B, T, N, C = x.shape # result of next line is (qkv, B, num (H)eads, T, N, (C')hannels per head) qkv = self.qkv(x).reshape(B, T, N, 3, self.num_heads, C // self.num_heads).permute(3, 0, 4, 1, 2, 5) q, k, v = qkv[0], qkv[1], qkv[2] # make torchscript happy (cannot use tensor as tuple) attn = (q @ k.transpose(-2, -1)) * self.scale # (B, H, T, N, N) attn = attn.softmax(dim=-1) attn = self.attn_drop(attn) # (B, H, T, N, C'), permute -> (B, T, N, C', H) x = (attn @ v).permute(0, 2, 3, 4, 1).reshape(B, T, N, C) x = self.proj(x) x = self.proj_drop(x) return x # (B, T, N, C) class TransformerLayer(nn.Module): """ This is much like `.vision_transformer.Block` but: - Called TransformerLayer here to allow for "block" as defined in the paper ("non-overlapping image blocks") - Uses modified Attention layer that handles the "block" dimension """ def __init__(self, dim, num_heads, mlp_ratio=4., qkv_bias=False, drop=0., attn_drop=0., drop_path=0., act_layer=nn.GELU, norm_layer=nn.LayerNorm): super().__init__() self.norm1 = norm_layer(dim) self.attn = Attention(dim, num_heads=num_heads, qkv_bias=qkv_bias, attn_drop=attn_drop, proj_drop=drop) self.drop_path = DropPath(drop_path) if drop_path > 0. else nn.Identity() self.norm2 = norm_layer(dim) mlp_hidden_dim = int(dim * mlp_ratio) self.mlp = Mlp(in_features=dim, hidden_features=mlp_hidden_dim, act_layer=act_layer, drop=drop) def forward(self, x): y = self.norm1(x) x = x + self.drop_path(self.attn(y)) x = x + self.drop_path(self.mlp(self.norm2(x))) return x class ConvPool(nn.Module): def __init__(self, in_channels, out_channels, norm_layer, pad_type=''): super().__init__() self.conv = create_conv2d(in_channels, out_channels, kernel_size=3, padding=pad_type, bias=True) self.norm = norm_layer(out_channels) self.pool = create_pool2d('max', kernel_size=3, stride=2, padding=pad_type) def forward(self, x): """ x is expected to have shape (B, C, H, W) """ assert x.shape[-2] % 2 == 0, 'BlockAggregation requires even input spatial dims' assert x.shape[-1] % 2 == 0, 'BlockAggregation requires even input spatial dims' x = self.conv(x) # Layer norm done over channel dim only x = self.norm(x.permute(0, 2, 3, 1)).permute(0, 3, 1, 2) x = self.pool(x) return x # (B, C, H//2, W//2) def blockify(x, block_size: int): """image to blocks Args: x (Tensor): with shape (B, H, W, C) block_size (int): edge length of a single square block in units of H, W """ B, H, W, C = x.shape assert H % block_size == 0, '`block_size` must divide input height evenly' assert W % block_size == 0, '`block_size` must divide input width evenly' grid_height = H // block_size grid_width = W // block_size x = x.reshape(B, grid_height, block_size, grid_width, block_size, C) x = x.transpose(2, 3).reshape(B, grid_height * grid_width, -1, C) return x # (B, T, N, C) def deblockify(x, block_size: int): """blocks to image Args: x (Tensor): with shape (B, T, N, C) where T is number of blocks and N is sequence size per block block_size (int): edge length of a single square block in units of desired H, W """ B, T, _, C = x.shape grid_size = int(math.sqrt(T)) height = width = grid_size * block_size x = x.reshape(B, grid_size, grid_size, block_size, block_size, C) x = x.transpose(2, 3).reshape(B, height, width, C) return x # (B, H, W, C) class NestLevel(nn.Module): """ Single hierarchical level of a Nested Transformer """ def __init__( self, num_blocks, block_size, seq_length, num_heads, depth, embed_dim, prev_embed_dim=None, mlp_ratio=4., qkv_bias=True, drop_rate=0., attn_drop_rate=0., drop_path_rates=[], norm_layer=None, act_layer=None, pad_type=''): super().__init__() self.block_size = block_size self.pos_embed = nn.Parameter(torch.zeros(1, num_blocks, seq_length, embed_dim)) if prev_embed_dim is not None: self.pool = ConvPool(prev_embed_dim, embed_dim, norm_layer=norm_layer, pad_type=pad_type) else: self.pool = nn.Identity() # Transformer encoder if len(drop_path_rates): assert len(drop_path_rates) == depth, 'Must provide as many drop path rates as there are transformer layers' self.transformer_encoder = nn.Sequential(*[ TransformerLayer( dim=embed_dim, num_heads=num_heads, mlp_ratio=mlp_ratio, qkv_bias=qkv_bias, drop=drop_rate, attn_drop=attn_drop_rate, drop_path=drop_path_rates[i], norm_layer=norm_layer, act_layer=act_layer) for i in range(depth)]) def forward(self, x): """ expects x as (B, C, H, W) """ x = self.pool(x) x = x.permute(0, 2, 3, 1) # (B, H', W', C), switch to channels last for transformer x = blockify(x, self.block_size) # (B, T, N, C') x = x + self.pos_embed x = self.transformer_encoder(x) # (B, T, N, C') x = deblockify(x, self.block_size) # (B, H', W', C') # Channel-first for block aggregation, and generally to replicate convnet feature map at each stage return x.permute(0, 3, 1, 2) # (B, C, H', W') class Nest(nn.Module): """ Nested Transformer (NesT) A PyTorch impl of : `Aggregating Nested Transformers` - https://arxiv.org/abs/2105.12723 """ def __init__(self, img_size=224, in_chans=3, patch_size=4, num_levels=3, embed_dims=(128, 256, 512), num_heads=(4, 8, 16), depths=(2, 2, 20), num_classes=1000, mlp_ratio=4., qkv_bias=True, drop_rate=0., attn_drop_rate=0., drop_path_rate=0.5, norm_layer=None, act_layer=None, pad_type='', weight_init='', global_pool='avg'): """ Args: img_size (int, tuple): input image size in_chans (int): number of input channels patch_size (int): patch size num_levels (int): number of block hierarchies (T_d in the paper) embed_dims (int, tuple): embedding dimensions of each level num_heads (int, tuple): number of attention heads for each level depths (int, tuple): number of transformer layers for each level num_classes (int): number of classes for classification head mlp_ratio (int): ratio of mlp hidden dim to embedding dim for MLP of transformer layers qkv_bias (bool): enable bias for qkv if True drop_rate (float): dropout rate for MLP of transformer layers, MSA final projection layer, and classifier attn_drop_rate (float): attention dropout rate drop_path_rate (float): stochastic depth rate norm_layer: (nn.Module): normalization layer for transformer layers act_layer: (nn.Module): activation layer in MLP of transformer layers pad_type: str: Type of padding to use '' for PyTorch symmetric, 'same' for TF SAME weight_init: (str): weight init scheme global_pool: (str): type of pooling operation to apply to final feature map Notes: - Default values follow NesT-B from the original Jax code. - `embed_dims`, `num_heads`, `depths` should be ints or tuples with length `num_levels`. - For those following the paper, Table A1 may have errors! - https://github.com/google-research/nested-transformer/issues/2 """ super().__init__() for param_name in ['embed_dims', 'num_heads', 'depths']: param_value = locals()[param_name] if isinstance(param_value, collections.abc.Sequence): assert len(param_value) == num_levels, f'Require `len({param_name}) == num_levels`' embed_dims = to_ntuple(num_levels)(embed_dims) num_heads = to_ntuple(num_levels)(num_heads) depths = to_ntuple(num_levels)(depths) self.num_classes = num_classes self.num_features = embed_dims[-1] self.feature_info = [] norm_layer = norm_layer or partial(nn.LayerNorm, eps=1e-6) act_layer = act_layer or nn.GELU self.drop_rate = drop_rate self.num_levels = num_levels if isinstance(img_size, collections.abc.Sequence): assert img_size[0] == img_size[1], 'Model only handles square inputs' img_size = img_size[0] assert img_size % patch_size == 0, '`patch_size` must divide `img_size` evenly' self.patch_size = patch_size # Number of blocks at each level self.num_blocks = (4 ** torch.arange(num_levels)).flip(0).tolist() assert (img_size // patch_size) % math.sqrt(self.num_blocks[0]) == 0, \ 'First level blocks don\'t fit evenly. Check `img_size`, `patch_size`, and `num_levels`' # Block edge size in units of patches # Hint: (img_size // patch_size) gives number of patches along edge of image. sqrt(self.num_blocks[0]) is the # number of blocks along edge of image self.block_size = int((img_size // patch_size) // math.sqrt(self.num_blocks[0])) # Patch embedding self.patch_embed = PatchEmbed( img_size=img_size, patch_size=patch_size, in_chans=in_chans, embed_dim=embed_dims[0], flatten=False) self.num_patches = self.patch_embed.num_patches self.seq_length = self.num_patches // self.num_blocks[0] # Build up each hierarchical level levels = [] dp_rates = [x.tolist() for x in torch.linspace(0, drop_path_rate, sum(depths)).split(depths)] prev_dim = None curr_stride = 4 for i in range(len(self.num_blocks)): dim = embed_dims[i] levels.append(NestLevel( self.num_blocks[i], self.block_size, self.seq_length, num_heads[i], depths[i], dim, prev_dim, mlp_ratio, qkv_bias, drop_rate, attn_drop_rate, dp_rates[i], norm_layer, act_layer, pad_type=pad_type)) self.feature_info += [dict(num_chs=dim, reduction=curr_stride, module=f'levels.{i}')] prev_dim = dim curr_stride *= 2 self.levels = nn.Sequential(*levels) # Final normalization layer self.norm = norm_layer(embed_dims[-1]) # Classifier self.global_pool, self.head = create_classifier(self.num_features, self.num_classes, pool_type=global_pool) self.init_weights(weight_init) def init_weights(self, mode=''): assert mode in ('nlhb', '') head_bias = -math.log(self.num_classes) if 'nlhb' in mode else 0. for level in self.levels: trunc_normal_(level.pos_embed, std=.02, a=-2, b=2) named_apply(partial(_init_nest_weights, head_bias=head_bias), self) @torch.jit.ignore def no_weight_decay(self): return {f'level.{i}.pos_embed' for i in range(len(self.levels))} def get_classifier(self): return self.head def reset_classifier(self, num_classes, global_pool='avg'): self.num_classes = num_classes self.global_pool, self.head = create_classifier( self.num_features, self.num_classes, pool_type=global_pool) def forward_features(self, x): """ x shape (B, C, H, W) """ B, _, H, W = x.shape x = self.patch_embed(x) x = self.levels(x) # Layer norm done over channel dim only (to NHWC and back) x = self.norm(x.permute(0, 2, 3, 1)).permute(0, 3, 1, 2) return x def forward(self, x): """ x shape (B, C, H, W) """ x = self.forward_features(x) x = self.global_pool(x) if self.drop_rate > 0.: x = F.dropout(x, p=self.drop_rate, training=self.training) return self.head(x) def _init_nest_weights(module: nn.Module, name: str = '', head_bias: float = 0.): """ NesT weight initialization Can replicate Jax implementation. Otherwise follows vision_transformer.py """ if isinstance(module, nn.Linear): if name.startswith('head'): trunc_normal_(module.weight, std=.02, a=-2, b=2) nn.init.constant_(module.bias, head_bias) else: trunc_normal_(module.weight, std=.02, a=-2, b=2) if module.bias is not None: nn.init.zeros_(module.bias) elif isinstance(module, nn.Conv2d): trunc_normal_(module.weight, std=.02, a=-2, b=2) if module.bias is not None: nn.init.zeros_(module.bias) elif isinstance(module, (nn.LayerNorm, nn.GroupNorm, nn.BatchNorm2d)): nn.init.zeros_(module.bias) nn.init.ones_(module.weight) def resize_pos_embed(posemb, posemb_new): """ Rescale the grid of position embeddings when loading from state_dict Expected shape of position embeddings is (1, T, N, C), and considers only square images """ _logger.info('Resized position embedding: %s to %s', posemb.shape, posemb_new.shape) seq_length_old = posemb.shape[2] num_blocks_new, seq_length_new = posemb_new.shape[1:3] size_new = int(math.sqrt(num_blocks_new*seq_length_new)) # First change to (1, C, H, W) posemb = deblockify(posemb, int(math.sqrt(seq_length_old))).permute(0, 3, 1, 2) posemb = F.interpolate(posemb, size=[size_new, size_new], mode='bilinear') # Now change to new (1, T, N, C) posemb = blockify(posemb.permute(0, 2, 3, 1), int(math.sqrt(seq_length_new))) return posemb def checkpoint_filter_fn(state_dict, model): """ resize positional embeddings of pretrained weights """ pos_embed_keys = [k for k in state_dict.keys() if k.startswith('pos_embed_')] for k in pos_embed_keys: if state_dict[k].shape != getattr(model, k).shape: state_dict[k] = resize_pos_embed(state_dict[k], getattr(model, k)) return state_dict def _create_nest(variant, pretrained=False, default_cfg=None, **kwargs): default_cfg = default_cfg or default_cfgs[variant] model = build_model_with_cfg( Nest, variant, pretrained, default_cfg=default_cfg, feature_cfg=dict(out_indices=(0, 1, 2), flatten_sequential=True), pretrained_filter_fn=checkpoint_filter_fn, **kwargs) return model @register_model def nest_base(pretrained=False, **kwargs): """ Nest-B @ 224x224 """ model_kwargs = dict( embed_dims=(128, 256, 512), num_heads=(4, 8, 16), depths=(2, 2, 20), **kwargs) model = _create_nest('nest_base', pretrained=pretrained, **model_kwargs) return model @register_model def nest_small(pretrained=False, **kwargs): """ Nest-S @ 224x224 """ model_kwargs = dict(embed_dims=(96, 192, 384), num_heads=(3, 6, 12), depths=(2, 2, 20), **kwargs) model = _create_nest('nest_small', pretrained=pretrained, **model_kwargs) return model @register_model def nest_tiny(pretrained=False, **kwargs): """ Nest-T @ 224x224 """ model_kwargs = dict(embed_dims=(96, 192, 384), num_heads=(3, 6, 12), depths=(2, 2, 8), **kwargs) model = _create_nest('nest_tiny', pretrained=pretrained, **model_kwargs) return model @register_model def jx_nest_base(pretrained=False, **kwargs): """ Nest-B @ 224x224, Pretrained weights converted from official Jax impl. """ kwargs['pad_type'] = 'same' model_kwargs = dict(embed_dims=(128, 256, 512), num_heads=(4, 8, 16), depths=(2, 2, 20), **kwargs) model = _create_nest('jx_nest_base', pretrained=pretrained, **model_kwargs) return model @register_model def jx_nest_small(pretrained=False, **kwargs): """ Nest-S @ 224x224, Pretrained weights converted from official Jax impl. """ kwargs['pad_type'] = 'same' model_kwargs = dict(embed_dims=(96, 192, 384), num_heads=(3, 6, 12), depths=(2, 2, 20), **kwargs) model = _create_nest('jx_nest_small', pretrained=pretrained, **model_kwargs) return model @register_model def jx_nest_tiny(pretrained=False, **kwargs): """ Nest-T @ 224x224, Pretrained weights converted from official Jax impl. """ kwargs['pad_type'] = 'same' model_kwargs = dict(embed_dims=(96, 192, 384), num_heads=(3, 6, 12), depths=(2, 2, 8), **kwargs) model = _create_nest('jx_nest_tiny', pretrained=pretrained, **model_kwargs) return model